HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905355: a HoloFood chicken host

Data available for SAMEA112905355


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
View 4 derived samples
API endpoint
/api/animals/SAMEA112905355 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905355, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21.9 g
Average Daily Feed intake: Day 00 - 35 83.21 g
Average Daily Feed intake: Day 07 - 21 73.2 g
Average Daily Feed intake: Day 21 - 35 127.17 g
Average Daily Gain: Day 00 - 07 22.25 g
Average Daily Gain: Day 00 - 35 57.17 g
Average Daily Gain: Day 07 - 21 53.96 g
Average Daily Gain: Day 21 - 35 77.84 g
Average European Performance Efficiency Factor: Day 00 - 07 226.11 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.357 None
Average Feed to Conversion Ratio: Day 07 - 21 1.357 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 45.18 g
Average body weight at day 07 200.95 g
Average body weight at day 21 956.45 g
Average body weight at day 35 2046.2 g
European Performance Efficiency Factor: Day 00 - 35 392.78 None
European Performance Efficiency Factor: Day 07 - 21 397.82 None
European Performance Efficiency Factor: Day 21 - 35 476.39 None
FCR (not corrected): Day 00 - 07 0.984 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.456 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.634 None
Feed to Conversion Ratio: Day 00 - 07 0.984 g/g
Feed to Conversion Ratio: Day 00 - 35 1.456 g/g
Feed to Conversion Ratio: Day 21 - 35 1.634 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=85.71 P1=14.29 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=13.64 P1=4.55 P2=40.91 P3=36.36 P4=4.55 %
Litter at Day 07 5.89 pH
Litter at Day 21 7.93 pH
Litter at Day 35 8.46 pH
Mean Abdominal fat Yield 1.53 %
Mean Abdominal fat weight 33.65 g
Mean Breast Yield 19.11 %
Mean Breast weight 421.22 g
Mean CRP at Day 07 2.1449 pg/mg
Mean CRP at Day 21 3.3453 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1686.7 g
Mean Carcass Yield 76.76 %
Mean HPT at Day 07 1.1937 ng/ml
Mean HPT at Day 21 0.59161 ng/ml
Mean HPT at Day 35 0.59161 ng/ml
Mean LPS at Day 07 4.962 ng/L
Mean LPS at Day 21 3.5175 ng/L
Mean LPS at Day 35 6.0361 ng/L
Mean Legs Yield 20.9 %
Mean Legs weight 460.45 g
Mean TBARS 0.07 mg MDA/kg
Mean carcass body weight 2200 g
Mean feather cortisol at Day 07 8.645 pg/mg
Mean feather cortisol at Day 21 17.798 pg/mg
Mean feather cortisol at Day 35 14.48 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC13 None

Sample metadata

Marker Measurement Units
Animal code CC13.05 None
Breed Cobb None
C-Reactive protein 5.17 pg/ml
Chicken body weight 188.6 g
Feather cortisol 6.86 pg/mg
Haptoglobin 78.41 ng/ml
Lipopolysaccharide 24.99 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None