HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308446

Details for MGYG000308446, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Heritagella intestinalis Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > Heritagella > Heritagella intestinalis
Cluster representative

MGYG000318606

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318606 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308446’s cluster representative genome MGYG000318606 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318606 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308446 Copy API Endpoint
Samples containing this genome

MGYG000308446’s cluster representative (MGYG000318606) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318606’s sequence. Because MGYG000308446 has been clustered with MGYG000318606 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308446.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318606

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7697625 Probiotic
1.00 SAMEA7025252 Prebiotic
0.99 SAMEA9449957 Probiotic
0.98 SAMEA10104944 Probiotic
0.97 SAMEA10104940 Probiotic
0.96 SAMEA7025238 Probiotic
0.95 SAMEA7025234 Control
0.94 SAMEA14409936 Control
0.88 SAMEA10104938 Prebiotic
0.86 SAMEA7571834 Prebiotic