HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308439

Details for MGYG000308439, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Eisenbergiella merdavium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Eisenbergiella > Eisenbergiella merdavium
Cluster representative

MGYG000316151

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316151 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308439’s cluster representative genome MGYG000316151 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316151 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308439 Copy API Endpoint
Samples containing this genome

MGYG000308439’s cluster representative (MGYG000316151) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316151’s sequence. Because MGYG000308439 has been clustered with MGYG000316151 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308439.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316151

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Containment Sample accession Animal accession Treatment
1.00 SAMEA10105026 Control
1.00 SAMEA7571810 Prebiotic
1.00 SAMEA7697592 Control
1.00 SAMEA10104983 Control
1.00 SAMEA10105043 Control
1.00 SAMEA10145562 Control
1.00 SAMEA10105048 Control
1.00 SAMEA9449921 Control
1.00 SAMEA10104925 Control
1.00 SAMEA9449844 Control