HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308405

Details for MGYG000308405, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Scatosoma sp904419075 Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Scatosoma > Scatosoma sp904419075
Cluster representative

MGYG000319320

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319320 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308405’s cluster representative genome MGYG000319320 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319320 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308405 Copy API Endpoint
Samples containing this genome

MGYG000308405’s cluster representative (MGYG000319320) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319320’s sequence. Because MGYG000308405 has been clustered with MGYG000319320 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308405.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319320

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7697588 Probiotic
0.97 SAMEA7025266 Probiotic
0.92 SAMEA7025263 Control
0.90 SAMEA7571826 Probiotic
0.90 SAMEA7571834 Prebiotic
0.89 SAMEA7571833 Prebiotic
0.75 SAMEA7697589 Control
0.72 SAMEA9449833 Probiotic
0.70 SAMEA7025258 Probiotic
0.69 SAMEA10105015 Probiotic