MGYG000308405

Taxonomy

Scatosoma sp904419075 Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Scatosoma > Scatosoma sp904419075

Cluster representative

MGYG000319320

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319320 on MGnify
 Show other genomes in cluster

Annotations

MGYG000308405’s cluster representative genome MGYG000319320 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319320 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308405 Copy API Endpoint

MGYG000308405’s cluster representative (MGYG000319320) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319320’s sequence. Because MGYG000308405 has been clustered with MGYG000319320 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308405.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319320

 Download all as TSV

Containment	Sample accession	Animal accession	Treatment
0.21	SAMEA7571868	SAMEA112904925	Prebiotic
0.21	SAMEA9449840	SAMEA112905215	Probiotic
0.21	SAMEA7025238	SAMEA112905325	Probiotic
0.21	SAMEA10104990	SAMEA112905160	Prebiotic
0.20	SAMEA7025236	SAMEA112905113	Probiotic
0.20	SAMEA7697592	SAMEA112904737	Control
0.20	SAMEA9449907	SAMEA112905341	Prebiotic
0.20	SAMEA10104910	SAMEA112904813	Probiotic