HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308394

Details for MGYG000308394, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Blautia merdavium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Blautia > Blautia merdavium
Cluster representative

MGYG000317268

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317268 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308394’s cluster representative genome MGYG000317268 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317268 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308394 Copy API Endpoint
Samples containing this genome

MGYG000308394’s cluster representative (MGYG000317268) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317268’s sequence. Because MGYG000308394 has been clustered with MGYG000317268 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308394.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317268

 Download all as TSV
Containment Sample accession Animal accession Treatment
1.00 SAMEA7697592 Control
0.99 SAMEA10105012 Control
0.97 SAMEA7025289 Control
0.96 SAMEA10454443 Probiotic
0.96 SAMEA10105063 Prebiotic
0.92 SAMEA9449869 Prebiotic
0.92 SAMEA10105000 Control
0.92 SAMEA10104944 Probiotic
0.92 SAMEA9449843 Probiotic
0.91 SAMEA10105045 Control