HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308393

Details for MGYG000308393, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAJFUH01 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > CAJFUH01
Cluster representative

MGYG000317568

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317568 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308393’s cluster representative genome MGYG000317568 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317568 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308393 Copy API Endpoint
Samples containing this genome

MGYG000308393’s cluster representative (MGYG000317568) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317568’s sequence. Because MGYG000308393 has been clustered with MGYG000317568 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308393.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317568

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7697598 Control
0.96 SAMEA7025237 Probiotic
0.95 SAMEA7697625 Probiotic
0.94 SAMEA9449922 Control
0.94 SAMEA14409936 Control
0.92 SAMEA7697631 Prebiotic
0.92 SAMEA7025242 Control
0.88 SAMEA7571862 Probiotic
0.87 SAMEA7571766 Control
0.86 SAMEA7025271 Probiotic