MGYG000308386

Taxonomy

Escherichia coli Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Escherichia > Escherichia coli

Cluster representative

MGYG000312616

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312616 on MGnify
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Annotations

MGYG000308386’s cluster representative genome MGYG000312616 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312616 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308386 Copy API Endpoint

MGYG000308386’s cluster representative (MGYG000312616) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312616’s sequence. Because MGYG000308386 has been clustered with MGYG000312616 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308386.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312616

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10158019	SAMEA112905219	Control
1.00	SAMEA10455479	SAMEA112904776	Prebiotic
1.00	SAMEA10455483	SAMEA112905075	Prebiotic
0.99	SAMEA7368180	SAMEA112905368	Probiotic
0.99	SAMEA10130005	SAMEA112904934	Control
0.99	SAMEA9449879	SAMEA112905323	Probiotic
0.99	SAMEA7571764	SAMEA112905219	Control
0.99	SAMEA7722473	SAMEA112905065	Prebiotic
0.99	SAMEA10130053	SAMEA112904848	Probiotic
0.98	SAMEA14409936	SAMEA112904743	Control