HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.


Details for MGYG000308386, a genome assembled from HoloFood chicken metagenomes

Genome details
Escherichia coli Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Escherichia > Escherichia coli
Cluster representative


Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312616 on MGnify
 Show other genomes in cluster

MGYG000308386’s cluster representative genome MGYG000312616 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312616 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308386 Copy API Endpoint
Samples containing this genome

MGYG000308386’s cluster representative (MGYG000312616) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312616’s sequence. Because MGYG000308386 has been clustered with MGYG000312616 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308386.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312616

 Download all as TSV
Containment Sample accession Animal accession Treatment
1.00 SAMEA10158019 Control
1.00 SAMEA10455479 Prebiotic
1.00 SAMEA10455483 Prebiotic
0.99 SAMEA7368180 Probiotic
0.99 SAMEA10130005 Control
0.99 SAMEA9449879 Probiotic
0.99 SAMEA7571764 Control
0.99 SAMEA7722473 Prebiotic
0.99 SAMEA10130053 Probiotic
0.98 SAMEA14409936 Control