MGYG000320877

Taxonomy

UBA3637 Bacteria > Proteobacteria > Alphaproteobacteria > RF32 > UBA3637

Cluster representative

MGYG000315215

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315215 on MGnify
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Annotations

MGYG000320877’s cluster representative genome MGYG000315215 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315215 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320877 Copy API Endpoint

MGYG000320877’s cluster representative (MGYG000315215) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315215’s sequence. Because MGYG000320877 has been clustered with MGYG000315215 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320877.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315215

 Download all as TSV

Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7697626	SAMEA112905069	Probiotic
1.00	SAMEA10145601	SAMEA112905257	Control
1.00	SAMEA7025289	SAMEA112905253	Control
1.00	SAMEA7571832	SAMEA112905299	Control
1.00	SAMEA10105047	SAMEA112905233	Control
1.00	SAMEA7697613	SAMEA112905262	Prebiotic
1.00	SAMEA9449963	SAMEA112905164	Probiotic
1.00	SAMEA9449933	SAMEA112904886	Prebiotic
0.99	SAMEA7025281	SAMEA112904979	Probiotic
0.98	SAMEA7025287	SAMEA112905268	Prebiotic