HoloFood Data Portal

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MGYG000320877

Details for MGYG000320877, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
UBA3637 Bacteria > Proteobacteria > Alphaproteobacteria > RF32 > UBA3637
Cluster representative

MGYG000315215

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315215 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320877’s cluster representative genome MGYG000315215 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315215 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320877 Copy API Endpoint
Samples containing this genome

MGYG000320877’s cluster representative (MGYG000315215) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315215’s sequence. Because MGYG000320877 has been clustered with MGYG000315215 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320877.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315215

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Containment Sample accession Animal accession Treatment
0.98 SAMEA7025283 Control
0.97 SAMEA7697608 Control
0.95 SAMEA10105052 Control
0.94 SAMEA7697624 Probiotic
0.92 SAMEA9449916 Probiotic
0.90 SAMEA9449923 Probiotic
0.87 SAMEA7697637 Prebiotic
0.86 SAMEA7025277 Control
0.85 SAMEA10454449 Prebiotic
0.79 SAMEA7571849 Prebiotic