HoloFood Data Portal

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MGYG000320876

Details for MGYG000320876, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Sellimonas intestinalis Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Sellimonas > Sellimonas intestinalis
Cluster representative

MGYG000320876

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320876 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320876’s cluster representative genome MGYG000320876 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320876 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320876 Copy API Endpoint
Samples containing this genome

MGYG000320876’s cluster representative (MGYG000320876) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320876’s sequence. Because MGYG000320876 has been clustered with MGYG000320876 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320876.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320876

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7697594 Probiotic
0.99 SAMEA9449922 Control
0.98 SAMEA7697625 Probiotic
0.93 SAMEA7025276 Control
0.90 SAMEA14409936 Control
0.90 SAMEA7025271 Probiotic
0.89 SAMEA10158036 Probiotic
0.88 SAMEA10105038 Probiotic
0.87 SAMEA7697613 Prebiotic
0.81 SAMEA9449933 Prebiotic