HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320822

Details for MGYG000320822, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Lachnoclostridium_B sp000765215 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Lachnoclostridium_B > Lachnoclostridium_B sp000765215
Cluster representative

MGYG000308097

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308097 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320822’s cluster representative genome MGYG000308097 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308097 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320822 Copy API Endpoint
Samples containing this genome

MGYG000320822’s cluster representative (MGYG000308097) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308097’s sequence. Because MGYG000320822 has been clustered with MGYG000308097 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320822.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308097

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Containment Sample accession Animal accession Treatment
0.78 SAMEA7571802 Control
0.77 SAMEA9449945 Prebiotic
0.77 SAMEA10104989 Prebiotic
0.77 SAMEA7697594 Probiotic
0.77 SAMEA7571823 Probiotic
0.76 SAMEA10105000 Control
0.75 SAMEA7025272 Prebiotic
0.75 SAMEA9449856 Prebiotic
0.75 SAMEA7025245 Probiotic
0.75 SAMEA7025276 Control