MGYG000320818

Taxonomy

CAG-273 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-273

Cluster representative

MGYG000313930

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313930 on MGnify
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Annotations

MGYG000320818’s cluster representative genome MGYG000313930 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313930 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320818 Copy API Endpoint

MGYG000320818’s cluster representative (MGYG000313930) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313930’s sequence. Because MGYG000320818 has been clustered with MGYG000313930 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320818.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313930

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10159257	SAMEA112905376	Control
1.00	SAMEA9449902	SAMEA112904829	Control
1.00	SAMEA10105016	SAMEA112904744	Probiotic
1.00	SAMEA10105039	SAMEA112905019	Probiotic
1.00	SAMEA10145572	SAMEA112905165	Control
1.00	SAMEA10104991	SAMEA112904767	Prebiotic
1.00	SAMEA7025274	SAMEA112905263	Probiotic
1.00	SAMEA10105019	SAMEA112905196	Control
1.00	SAMEA10104937	SAMEA112904876	Prebiotic
1.00	SAMEA7025248	SAMEA112905319	Probiotic