MGYG000320815

Taxonomy

Limenecus avicola Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > Gastranaerophilaceae > Limenecus > Limenecus avicola

Cluster representative

MGYG000317187

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317187 on MGnify
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Annotations

MGYG000320815’s cluster representative genome MGYG000317187 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317187 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320815 Copy API Endpoint

MGYG000320815’s cluster representative (MGYG000317187) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317187’s sequence. Because MGYG000320815 has been clustered with MGYG000317187 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320815.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317187

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10104921	SAMEA112905172	Prebiotic
1.00	SAMEA10159245	SAMEA112905091	Prebiotic
1.00	SAMEA7722476	SAMEA112904871	Control
1.00	SAMEA10159244	SAMEA112905364	Probiotic
1.00	SAMEA7697581	SAMEA112905343	Probiotic
1.00	SAMEA10104925	SAMEA112905338	Control
1.00	SAMEA7025247	SAMEA112905298	Probiotic
1.00	SAMEA7025241	SAMEA112905244	Probiotic
1.00	SAMEA10455481	SAMEA112904774	Control
1.00	SAMEA10145564	SAMEA112905104	Control