HoloFood Data Portal

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MGYG000320796

Details for MGYG000320796, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens sp905195085 Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens > Caccovivens sp905195085
Cluster representative

MGYG000320029

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320029 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320796’s cluster representative genome MGYG000320029 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320029 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320796 Copy API Endpoint
Samples containing this genome

MGYG000320796’s cluster representative (MGYG000320029) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320029’s sequence. Because MGYG000320796 has been clustered with MGYG000320029 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320796.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320029

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Containment Sample accession Animal accession Treatment
0.96 SAMEA10104963 Control
0.96 SAMEA9449846 Prebiotic
0.96 SAMEA10104930 Control
0.96 SAMEA10104938 Prebiotic
0.95 SAMEA7571819 Probiotic
0.95 SAMEA10455481 Control
0.95 SAMEA9449856 Prebiotic
0.95 SAMEA7571853 Prebiotic
0.94 SAMEA7571820 Probiotic
0.94 SAMEA10105013 Control