MGYG000320783

Taxonomy

UMGS1370 sp904395885 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > UMGS1370 > UMGS1370 sp904395885

Cluster representative

MGYG000310153

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310153 on MGnify
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Annotations

MGYG000320783’s cluster representative genome MGYG000310153 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310153 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320783 Copy API Endpoint

MGYG000320783’s cluster representative (MGYG000310153) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310153’s sequence. Because MGYG000320783 has been clustered with MGYG000310153 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320783.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310153

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Containment	Sample accession	Animal accession	Treatment
0.99	SAMEA7571810	SAMEA112905369	Prebiotic
0.99	SAMEA7697599	SAMEA112904961	Control
0.99	SAMEA14095992	SAMEA112904848	Probiotic
0.99	SAMEA7571820	SAMEA112905089	Probiotic
0.98	SAMEA7697613	SAMEA112905262	Prebiotic
0.98	SAMEA7697581	SAMEA112905343	Probiotic
0.98	SAMEA7571807	SAMEA112905097	Probiotic
0.98	SAMEA7025254	SAMEA112904883	Prebiotic
0.98	SAMEA7025280	SAMEA112905349	Probiotic
0.97	SAMEA7025286	SAMEA112904985	Prebiotic