HoloFood Data Portal

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MGYG000320780

Details for MGYG000320780, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
UBA1405 sp002305685 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > UBA1405 > UBA1405 sp002305685
Cluster representative

MGYG000320780

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320780 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320780’s cluster representative genome MGYG000320780 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320780 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320780 Copy API Endpoint
Samples containing this genome

MGYG000320780’s cluster representative (MGYG000320780) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320780’s sequence. Because MGYG000320780 has been clustered with MGYG000320780 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320780.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320780

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Containment Sample accession Animal accession Treatment
0.87 SAMEA10455484 Prebiotic
0.86 SAMEA7571812 Control
0.85 SAMEA7025269 Probiotic
0.83 SAMEA10454449 Prebiotic
0.81 SAMEA10104993 Prebiotic
0.81 SAMEA10455477 Probiotic
0.81 SAMEA9449907 Prebiotic
0.80 SAMEA10145560 Control
0.80 SAMEA7571794 Prebiotic
0.80 SAMEA10104915 Control