HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320757

Details for MGYG000320757, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Streptococcus alactolyticus Bacteria > Firmicutes > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus alactolyticus
Cluster representative

MGYG000309441

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309441 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320757’s cluster representative genome MGYG000309441 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309441 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320757 Copy API Endpoint
Samples containing this genome

MGYG000320757’s cluster representative (MGYG000309441) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309441’s sequence. Because MGYG000320757 has been clustered with MGYG000309441 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320757.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309441

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025269 Probiotic
0.99 SAMEA10145584 Control
0.99 SAMEA14095991 Control
0.88 SAMEA7368187 Control
0.87 SAMEA7025256 Prebiotic
0.83 SAMEA10130110 Control
0.83 SAMEA9449888 Probiotic
0.83 SAMEA10158020 Prebiotic
0.82 SAMEA10145583 Control
0.82 SAMEA7571820 Probiotic