MGYG000320724

Taxonomy

Caccovivens sp905195085 Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens > Caccovivens sp905195085

Cluster representative

MGYG000320029

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320029 on MGnify
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Annotations

MGYG000320724’s cluster representative genome MGYG000320029 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320029 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320724 Copy API Endpoint

MGYG000320724’s cluster representative (MGYG000320029) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320029’s sequence. Because MGYG000320724 has been clustered with MGYG000320029 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320724.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320029

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7571810	SAMEA112905369	Prebiotic
1.00	SAMEA9449926	SAMEA112904943	Prebiotic
1.00	SAMEA10145572	SAMEA112905165	Control
1.00	SAMEA7722473	SAMEA112905065	Prebiotic
1.00	SAMEA7025287	SAMEA112905268	Prebiotic
1.00	SAMEA7025261	SAMEA112905342	Probiotic
1.00	SAMEA7571801	SAMEA112904766	Probiotic
1.00	SAMEA10104937	SAMEA112904876	Prebiotic
1.00	SAMEA10455496	SAMEA112904924	Control
1.00	SAMEA10455479	SAMEA112904776	Prebiotic