HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320610

Details for MGYG000320610, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Lachnoclostridium_A sp002160755 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Lachnoclostridium_A > Lachnoclostridium_A sp002160755
Cluster representative

MGYG000317982

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317982 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320610’s cluster representative genome MGYG000317982 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317982 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320610 Copy API Endpoint
Samples containing this genome

MGYG000320610’s cluster representative (MGYG000317982) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317982’s sequence. Because MGYG000320610 has been clustered with MGYG000317982 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320610.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317982

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Containment Sample accession Animal accession Treatment
0.93 SAMEA7697583 Probiotic
0.92 SAMEA7025242 Control
0.91 SAMEA7025249 Prebiotic
0.91 SAMEA7571787 Probiotic
0.91 SAMEA10455495 Control
0.89 SAMEA10145564 Control
0.89 SAMEA10104943 Probiotic
0.88 SAMEA9449921 Control
0.87 SAMEA7025278 Prebiotic
0.87 SAMEA7025269 Probiotic