MGYG000320537

Taxonomy

WRFS01 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > WRFS01

Cluster representative

MGYG000313810

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313810 on MGnify
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Annotations

MGYG000320537’s cluster representative genome MGYG000313810 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313810 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320537 Copy API Endpoint

MGYG000320537’s cluster representative (MGYG000313810) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313810’s sequence. Because MGYG000320537 has been clustered with MGYG000313810 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320537.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313810

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA9449868	SAMEA112904935	Control
1.00	SAMEA7571845	SAMEA112904735	Control
1.00	SAMEA7697613	SAMEA112905262	Prebiotic
1.00	SAMEA10145601	SAMEA112905257	Control
1.00	SAMEA7571801	SAMEA112904766	Probiotic
1.00	SAMEA7571843	SAMEA112904832	Prebiotic
1.00	SAMEA9449923	SAMEA112904816	Probiotic
1.00	SAMEA7722473	SAMEA112905065	Prebiotic
1.00	SAMEA7697612	SAMEA112904835	Control
1.00	SAMEA7697581	SAMEA112905343	Probiotic