MGYG000320455

Taxonomy

Gemmiger Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Gemmiger

Cluster representative

MGYG000309086

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309086 on MGnify
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Annotations

MGYG000320455’s cluster representative genome MGYG000309086 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309086 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320455 Copy API Endpoint

MGYG000320455’s cluster representative (MGYG000309086) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309086’s sequence. Because MGYG000320455 has been clustered with MGYG000309086 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320455.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309086

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025259	SAMEA112905304	Prebiotic
1.00	SAMEA7025274	SAMEA112905263	Probiotic
1.00	SAMEA7571780	SAMEA112905210	Control
1.00	SAMEA7571822	SAMEA112904992	Probiotic
1.00	SAMEA9449896	SAMEA112905007	Prebiotic
1.00	SAMEA7025246	SAMEA112905368	Probiotic
1.00	SAMEA10104955	SAMEA112904953	Control
0.99	SAMEA9449882	SAMEA112905239	Control
0.99	SAMEA14095989	SAMEA112904946	Prebiotic
0.99	SAMEA10104928	SAMEA112905211	Prebiotic