HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320211

Details for MGYG000320211, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Pelethomonas intestinigallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Pelethomonas > Pelethomonas intestinigallinarum
Cluster representative

MGYG000315591

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315591 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320211’s cluster representative genome MGYG000315591 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315591 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320211 Copy API Endpoint
Samples containing this genome

MGYG000320211’s cluster representative (MGYG000315591) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315591’s sequence. Because MGYG000320211 has been clustered with MGYG000315591 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320211.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315591

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Containment Sample accession Animal accession Treatment
0.99 SAMEA7697595 Prebiotic
0.99 SAMEA7025274 Probiotic
0.99 SAMEA10105065 Prebiotic
0.99 SAMEA10104930 Control
0.99 SAMEA9449950 Prebiotic
0.99 SAMEA7025238 Probiotic
0.99 SAMEA7025268 Control
0.99 SAMEA7025277 Control
0.99 SAMEA10104991 Prebiotic
0.99 SAMEA9449888 Probiotic