HoloFood Data Portal

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MGYG000320129

Details for MGYG000320129, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Egerieicola Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Egerieicola
Cluster representative

MGYG000315346

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315346 on MGnify
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Annotations

MGYG000320129’s cluster representative genome MGYG000315346 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315346 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320129 Copy API Endpoint
Samples containing this genome

MGYG000320129’s cluster representative (MGYG000315346) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315346’s sequence. Because MGYG000320129 has been clustered with MGYG000315346 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320129.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315346

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Containment Sample accession Animal accession Treatment
0.78 SAMEA9449962 Control
0.75 SAMEA7697637 Prebiotic
0.72 SAMEA10104915 Control
0.71 SAMEA9449879 Probiotic
0.70 SAMEA7025256 Prebiotic
0.66 SAMEA7025287 Prebiotic
0.59 SAMEA9449944 Control
0.58 SAMEA7025248 Probiotic
0.55 SAMEA10104972 Probiotic
0.49 SAMEA7571768 Control