HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905371: a HoloFood chicken host

Data available for SAMEA112905371


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
View 4 derived samples
API endpoint
/api/animals/SAMEA112905371 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905371, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 23.82 g
Average Daily Feed intake: Day 00 - 35 83.18 g
Average Daily Feed intake: Day 07 - 21 73.65 g
Average Daily Feed intake: Day 21 - 35 126.12 g
Average Daily Gain: Day 00 - 07 22.67 g
Average Daily Gain: Day 00 - 35 56.87 g
Average Daily Gain: Day 07 - 21 56.11 g
Average Daily Gain: Day 21 - 35 74.74 g
Average European Performance Efficiency Factor: Day 00 - 07 215.72 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.313 None
Average Feed to Conversion Ratio: Day 07 - 21 1.313 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 47.42 g
Average body weight at day 07 206.11 g
Average body weight at day 21 991.67 g
Average body weight at day 35 2038 g
European Performance Efficiency Factor: Day 00 - 35 388.87 None
European Performance Efficiency Factor: Day 07 - 21 427.49 None
European Performance Efficiency Factor: Day 21 - 35 442.9 None
FCR (not corrected): Day 00 - 07 1.051 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.463 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.687 None
Feed to Conversion Ratio: Day 00 - 07 1.051 g/g
Feed to Conversion Ratio: Day 00 - 35 1.463 g/g
Feed to Conversion Ratio: Day 21 - 35 1.687 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=88.89 P1=11.11 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=9.52 P1=14.29 P2=28.57 P3=47.62 P4=0.00 %
Litter at Day 07 5.89 pH
Litter at Day 21 6.61 pH
Litter at Day 35 8.49 pH
Mean Abdominal fat Yield 1.38 %
Mean Abdominal fat weight 29.82 g
Mean Breast Yield 18.08 %
Mean Breast weight 384.53 g
Mean CRP at Day 07 2.0559 pg/mg
Mean CRP at Day 21 3.063 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1635.6 g
Mean Carcass Yield 77.42 %
Mean HPT at Day 07 1.1095 ng/ml
Mean HPT at Day 21 0.69188 ng/ml
Mean HPT at Day 35 0.59161 ng/ml
Mean LPS at Day 07 6.3702 ng/L
Mean LPS at Day 21 4.5252 ng/L
Mean LPS at Day 35 6.0896 ng/L
Mean Legs Yield 21.28 %
Mean Legs weight 448.2 g
Mean TBARS 0.0467 mg MDA/kg
Mean carcass body weight 2116.7 g
Mean feather cortisol at Day 07 6.605 pg/mg
Mean feather cortisol at Day 21 14.052 pg/mg
Mean feather cortisol at Day 35 22.08 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC17 None

Sample metadata

Marker Measurement Units
Animal code CC17.10 None
Breed Cobb None
C-Reactive protein 16.48 pg/ml
Chicken body weight 1252 g
Feather cortisol 9.83 pg/mg
Haptoglobin 86.25 ng/ml
Lipopolysaccharide 18.65 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 21 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None