HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320046

Details for MGYG000320046, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Streptococcus gallolyticus Bacteria > Firmicutes > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus gallolyticus
Cluster representative

MGYG000320046

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320046 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320046’s cluster representative genome MGYG000320046 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320046 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320046 Copy API Endpoint
Samples containing this genome

MGYG000320046’s cluster representative (MGYG000320046) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320046’s sequence. Because MGYG000320046 has been clustered with MGYG000320046 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320046.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320046

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Containment Sample accession Animal accession Treatment
1.00 SAMEA10455502 Probiotic
0.59 SAMEA10455499 Prebiotic
0.57 SAMEA10130097 Prebiotic
0.50 SAMEA10130100 Probiotic
0.45 SAMEA10130091 Control
0.27 SAMEA7025277 Control
0.21 SAMEA10130110 Control
0.21 SAMEA7571821 Probiotic