HoloFood Data Portal

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MGYG000319963

Details for MGYG000319963, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Enterousia intestinigallinarum Bacteria > Proteobacteria > Alphaproteobacteria > Rs-D84 > Rs-D84 > Enterousia > Enterousia intestinigallinarum
Cluster representative

MGYG000319963

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319963 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319963’s cluster representative genome MGYG000319963 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319963 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319963 Copy API Endpoint
Samples containing this genome

MGYG000319963’s cluster representative (MGYG000319963) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319963’s sequence. Because MGYG000319963 has been clustered with MGYG000319963 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319963.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319963

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Containment Sample accession Animal accession Treatment
1.00 SAMEA10105011 Prebiotic
1.00 SAMEA10105013 Control
1.00 SAMEA7722478 Control
0.91 SAMEA10145585 Control
0.88 SAMEA10159267 Control
0.77 SAMEA9449910 Probiotic
0.70 SAMEA9449937 Probiotic
0.70 SAMEA10145575 Control
0.69 SAMEA7571832 Control
0.68 SAMEA7697613 Prebiotic