HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000319896

Details for MGYG000319896, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAJFPI01 sp904419145 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > CAJFPI01 > CAJFPI01 sp904419145
Cluster representative

MGYG000319896

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319896 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319896’s cluster representative genome MGYG000319896 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319896 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319896 Copy API Endpoint
Samples containing this genome

MGYG000319896’s cluster representative (MGYG000319896) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319896’s sequence. Because MGYG000319896 has been clustered with MGYG000319896 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319896.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319896

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.92 SAMEA10104941 Probiotic
0.92 SAMEA9449854 Prebiotic
0.92 SAMEA7697599 Control
0.92 SAMEA7571845 Control
0.92 SAMEA7025247 Probiotic
0.92 SAMEA7697576 Prebiotic
0.92 SAMEA9449916 Probiotic
0.92 SAMEA10104977 Control
0.92 SAMEA7025274 Probiotic
0.91 SAMEA10104993 Prebiotic