HoloFood Data Portal

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MGYG000319764

Details for MGYG000319764, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Alloclostridium intestinigallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA3700 > Alloclostridium > Alloclostridium intestinigallinarum
Cluster representative

MGYG000315443

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315443 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319764’s cluster representative genome MGYG000315443 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315443 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319764 Copy API Endpoint
Samples containing this genome

MGYG000319764’s cluster representative (MGYG000315443) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315443’s sequence. Because MGYG000319764 has been clustered with MGYG000315443 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319764.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315443

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7722479 Prebiotic
1.00 SAMEA7571788 Control
0.99 SAMEA7025247 Probiotic
0.99 SAMEA7025251 Control
0.99 SAMEA9449894 Probiotic
0.99 SAMEA10104921 Prebiotic
0.99 SAMEA9449836 Probiotic
0.97 SAMEA7025238 Probiotic
0.97 SAMEA10145585 Control
0.96 SAMEA7025289 Control