HoloFood Data Portal

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MGYG000319756

Details for MGYG000319756, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Borkfalkia excrementipullorum Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Borkfalkia > Borkfalkia excrementipullorum
Cluster representative

MGYG000315083

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315083 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319756’s cluster representative genome MGYG000315083 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315083 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319756 Copy API Endpoint
Samples containing this genome

MGYG000319756’s cluster representative (MGYG000315083) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315083’s sequence. Because MGYG000319756 has been clustered with MGYG000315083 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319756.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315083

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Containment Sample accession Animal accession Treatment
0.99 SAMEA7697598 Control
0.99 SAMEA7697588 Probiotic
0.99 SAMEA7025281 Probiotic
0.99 SAMEA10105004 Probiotic
0.99 SAMEA7025258 Probiotic
0.99 SAMEA7697594 Probiotic
0.98 SAMEA7697596 Prebiotic
0.98 SAMEA10104922 Prebiotic
0.98 SAMEA9449949 Prebiotic
0.97 SAMEA9449872 Prebiotic