MGYG000319575

Taxonomy

UBA1417 sp900552925 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > UBA1417 > UBA1417 sp900552925

Cluster representative

MGYG000310845

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310845 on MGnify
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Annotations

MGYG000319575’s cluster representative genome MGYG000310845 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310845 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319575 Copy API Endpoint

MGYG000319575’s cluster representative (MGYG000310845) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310845’s sequence. Because MGYG000319575 has been clustered with MGYG000310845 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319575.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310845

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Containment	Sample accession	Animal accession	Treatment
0.22	SAMEA10454448	SAMEA112905051	Prebiotic
0.22	SAMEA9449932	SAMEA112905251	Prebiotic
0.22	SAMEA7697607	SAMEA112904861	Control
0.22	SAMEA10105065	SAMEA112904742	Prebiotic
0.21	SAMEA10130027	SAMEA112905197	Control
0.21	SAMEA10105041	SAMEA112905046	Probiotic
0.21	SAMEA9449852	SAMEA112904941	Prebiotic
0.21	SAMEA9449927	SAMEA112904937	Prebiotic
0.21	SAMEA7368184	SAMEA112905304	Prebiotic
0.21	SAMEA9449946	SAMEA112905020	Prebiotic