MGYG000319522

Taxonomy

Alistipes merdavium Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > Alistipes > Alistipes merdavium

Cluster representative

MGYG000316309

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316309 on MGnify
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Annotations

MGYG000319522’s cluster representative genome MGYG000316309 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316309 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319522 Copy API Endpoint

MGYG000319522’s cluster representative (MGYG000316309) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316309’s sequence. Because MGYG000319522 has been clustered with MGYG000316309 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319522.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316309

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10105011	SAMEA112904889	Prebiotic
1.00	SAMEA10145585	SAMEA112905186	Control
1.00	SAMEA10104971	SAMEA112904825	Probiotic
1.00	SAMEA10104972	SAMEA112905094	Probiotic
1.00	SAMEA10104963	SAMEA112905330	Control
1.00	SAMEA7571801	SAMEA112904766	Probiotic
1.00	SAMEA7722478	SAMEA112905150	Control
1.00	SAMEA10159267	SAMEA112905062	Control
1.00	SAMEA10159263	SAMEA112905109	Prebiotic
1.00	SAMEA10145579	SAMEA112904838	Control