HoloFood Data Portal

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MGYG000319169

Details for MGYG000319169, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Onthoplasma Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Onthoplasma
Cluster representative

MGYG000319884

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319884 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319169’s cluster representative genome MGYG000319884 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319884 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319169 Copy API Endpoint
Samples containing this genome

MGYG000319169’s cluster representative (MGYG000319884) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319884’s sequence. Because MGYG000319169 has been clustered with MGYG000319884 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319169.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319884

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Containment Sample accession Animal accession Treatment
0.93 SAMEA7697592 Control
0.91 SAMEA14099422 Control
0.91 SAMEA7025287 Prebiotic
0.87 SAMEA10145585 Control
0.73 SAMEA10104973 Probiotic
0.70 SAMEA10130076 Prebiotic
0.68 SAMEA7571788 Control
0.68 SAMEA7025269 Probiotic
0.65 SAMEA7697624 Probiotic
0.65 SAMEA10145562 Control