HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000318961

Details for MGYG000318961, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Heritagella intestinalis Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > Heritagella > Heritagella intestinalis
Cluster representative

MGYG000318606

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318606 on MGnify
 Show other genomes in cluster
Annotations

MGYG000318961’s cluster representative genome MGYG000318606 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318606 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318961 Copy API Endpoint
Samples containing this genome

MGYG000318961’s cluster representative (MGYG000318606) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318606’s sequence. Because MGYG000318961 has been clustered with MGYG000318606 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318961.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318606

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Containment Sample accession Animal accession Treatment
0.21 SAMEA10104923 Control
0.21 SAMEA10105012 Control
0.21 SAMEA7571832 Control
0.21 SAMEA7571843 Prebiotic
0.21 SAMEA10455473 Probiotic
0.21 SAMEA7571791 Control
0.21 SAMEA9449949 Prebiotic
0.21 SAMEA10145587 Control
0.20 SAMEA10455486 Control
0.20 SAMEA10104981 Probiotic