HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000318936

Details for MGYG000318936, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Agathobaculum intestinigallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Agathobaculum > Agathobaculum intestinigallinarum
Cluster representative

MGYG000310077

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310077 on MGnify
 Show other genomes in cluster
Annotations

MGYG000318936’s cluster representative genome MGYG000310077 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310077 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318936 Copy API Endpoint
Samples containing this genome

MGYG000318936’s cluster representative (MGYG000310077) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310077’s sequence. Because MGYG000318936 has been clustered with MGYG000310077 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318936.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310077

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.23 SAMEA10130088 Prebiotic
0.23 SAMEA10104997 Prebiotic
0.23 SAMEA10104996 Prebiotic
0.23 SAMEA10104918 Probiotic
0.22 SAMEA10104929 Prebiotic
0.22 SAMEA10454446 Probiotic
0.22 SAMEA10104914 Control
0.22 SAMEA7571772 Prebiotic
0.22 SAMEA10159257 Control
0.22 SAMEA10104930 Control