MGYG000318909

Taxonomy

Galligastranaerophilus intestinavium Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > RUG14156 > Galligastranaerophilus > Galligastranaerophilus intestinavium

Cluster representative

MGYG000309076

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309076 on MGnify
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Annotations

MGYG000318909’s cluster representative genome MGYG000309076 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309076 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318909 Copy API Endpoint

MGYG000318909’s cluster representative (MGYG000309076) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309076’s sequence. Because MGYG000318909 has been clustered with MGYG000309076 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318909.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309076

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA9449833	SAMEA112904807	Probiotic
1.00	SAMEA7025240	SAMEA112904911	Probiotic
1.00	SAMEA9449865	SAMEA112904866	Control
1.00	SAMEA10104933	SAMEA112904856	Control
1.00	SAMEA10104929	SAMEA112905175	Prebiotic
1.00	SAMEA7025242	SAMEA112905292	Control
1.00	SAMEA7571775	SAMEA112904797	Control
1.00	SAMEA10159244	SAMEA112905364	Probiotic
1.00	SAMEA9449850	SAMEA112905380	Control
1.00	SAMEA10104914	SAMEA112904915	Control