MGYG000318530

Taxonomy

Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens

Cluster representative

MGYG000313182

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313182 on MGnify
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Annotations

MGYG000318530’s cluster representative genome MGYG000313182 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313182 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318530 Copy API Endpoint

MGYG000318530’s cluster representative (MGYG000313182) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313182’s sequence. Because MGYG000318530 has been clustered with MGYG000313182 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318530.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313182

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7571785	SAMEA112904982	Probiotic
0.99	SAMEA7025240	SAMEA112904911	Probiotic
0.99	SAMEA9449895	SAMEA112905248	Probiotic
0.99	SAMEA10104921	SAMEA112905172	Prebiotic
0.99	SAMEA7697586	SAMEA112904836	Prebiotic
0.99	SAMEA7571795	SAMEA112905322	Prebiotic
0.99	SAMEA7571775	SAMEA112904797	Control
0.99	SAMEA10104930	SAMEA112905365	Control
0.99	SAMEA10104928	SAMEA112905211	Prebiotic
0.99	SAMEA9449956	SAMEA112904759	Probiotic