HoloFood Data Portal

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MGYG000317881

Details for MGYG000317881, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
DSM-108975 sp014982715 Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > DSM-108975 > DSM-108975 sp014982715
Cluster representative

MGYG000310973

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310973 on MGnify
 Show other genomes in cluster
Annotations

MGYG000317881’s cluster representative genome MGYG000310973 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310973 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317881 Copy API Endpoint
Samples containing this genome

MGYG000317881’s cluster representative (MGYG000310973) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310973’s sequence. Because MGYG000317881 has been clustered with MGYG000310973 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317881.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310973

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Containment Sample accession Animal accession Treatment
0.90 SAMEA7697592 Control
0.90 SAMEA10104961 Probiotic
0.89 SAMEA14095991 Control
0.88 SAMEA7025271 Probiotic
0.87 SAMEA7571853 Prebiotic
0.86 SAMEA10454445 Probiotic
0.85 SAMEA9449918 Probiotic
0.84 SAMEA7571863 Probiotic
0.84 SAMEA10105013 Control
0.83 SAMEA10454442 Probiotic