HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000317539

Details for MGYG000317539, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Pelethosoma merdigallinarum Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Pelethosoma > Pelethosoma merdigallinarum
Cluster representative

MGYG000317857

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317857 on MGnify
 Show other genomes in cluster
Annotations

MGYG000317539’s cluster representative genome MGYG000317857 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317857 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317539 Copy API Endpoint
Samples containing this genome

MGYG000317539’s cluster representative (MGYG000317857) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317857’s sequence. Because MGYG000317539 has been clustered with MGYG000317857 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317539.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317857

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Containment Sample accession Animal accession Treatment
0.34 SAMEA9449923 Probiotic
0.34 SAMEA7571819 Probiotic
0.34 SAMEA9449846 Prebiotic
0.33 SAMEA10455483 Prebiotic
0.33 SAMEA10159263 Prebiotic
0.33 SAMEA9449839 Control
0.33 SAMEA10159257 Control
0.33 SAMEA9449898 Prebiotic
0.32 SAMEA7697608 Control
0.31 SAMEA10105037 Probiotic