HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000317509

Details for MGYG000317509, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens
Cluster representative

MGYG000313508

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313508 on MGnify
 Show other genomes in cluster
Annotations

MGYG000317509’s cluster representative genome MGYG000313508 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313508 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317509 Copy API Endpoint
Samples containing this genome

MGYG000317509’s cluster representative (MGYG000313508) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313508’s sequence. Because MGYG000317509 has been clustered with MGYG000313508 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317509.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313508

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.34 SAMEA9449892 Probiotic
0.34 SAMEA7697580 Probiotic
0.34 SAMEA9449835 Probiotic
0.34 SAMEA10105068 Prebiotic
0.34 SAMEA14099421 Control
0.33 SAMEA10104951 Prebiotic
0.33 SAMEA9449889 Probiotic
0.33 SAMEA9449833 Probiotic
0.32 SAMEA9449956 Probiotic
0.32 SAMEA9449918 Probiotic