HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000317458

Details for MGYG000317458, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Eubacterium_R faecavium Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > Eubacterium_R > Eubacterium_R faecavium
Cluster representative

MGYG000308046

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308046 on MGnify
 Show other genomes in cluster
Annotations

MGYG000317458’s cluster representative genome MGYG000308046 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308046 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317458 Copy API Endpoint
Samples containing this genome

MGYG000317458’s cluster representative (MGYG000308046) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308046’s sequence. Because MGYG000317458 has been clustered with MGYG000308046 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317458.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308046

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Containment Sample accession Animal accession Treatment
0.80 SAMEA9449939 Prebiotic
0.80 SAMEA7571802 Control
0.80 SAMEA9449895 Probiotic
0.80 SAMEA10105058 Control
0.80 SAMEA9449869 Prebiotic
0.80 SAMEA10105049 Control
0.80 SAMEA10105040 Control
0.80 SAMEA10105042 Probiotic
0.80 SAMEA7571816 Prebiotic
0.80 SAMEA7697636 Prebiotic