HoloFood Data Portal

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MGYG000317413

Details for MGYG000317413, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gallimonas gallistercoris Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Gallimonas > Gallimonas gallistercoris
Cluster representative

MGYG000317413

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317413 on MGnify
 Show other genomes in cluster
Annotations

MGYG000317413’s cluster representative genome MGYG000317413 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317413 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317413 Copy API Endpoint
Samples containing this genome

MGYG000317413’s cluster representative (MGYG000317413) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317413’s sequence. Because MGYG000317413 has been clustered with MGYG000317413 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317413.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317413

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Containment Sample accession Animal accession Treatment
0.23 SAMEA10104974 Probiotic
0.22 SAMEA7571800 Probiotic
0.22 SAMEA9449935 Control
0.22 SAMEA10455483 Prebiotic
0.22 SAMEA7025281 Probiotic
0.22 SAMEA9449916 Probiotic
0.22 SAMEA9449962 Control
0.22 SAMEA7697588 Probiotic
0.21 SAMEA10105048 Control
0.21 SAMEA7571872 Prebiotic