HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000317313

Details for MGYG000317313, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Faecousia excrementigallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Faecousia > Faecousia excrementigallinarum
Cluster representative

MGYG000316984

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316984 on MGnify
 Show other genomes in cluster
Annotations

MGYG000317313’s cluster representative genome MGYG000316984 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316984 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317313 Copy API Endpoint
Samples containing this genome

MGYG000317313’s cluster representative (MGYG000316984) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316984’s sequence. Because MGYG000317313 has been clustered with MGYG000316984 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317313.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316984

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Containment Sample accession Animal accession Treatment
0.30 SAMEA9449935 Control
0.30 SAMEA10159265 Probiotic
0.30 SAMEA9449896 Prebiotic
0.30 SAMEA9449890 Probiotic
0.30 SAMEA10145585 Control
0.30 SAMEA7571781 Control
0.29 SAMEA7571768 Control
0.29 SAMEA9449885 Control
0.29 SAMEA7571765 Probiotic
0.29 SAMEA10105068 Prebiotic