HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000317277

Details for MGYG000317277, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Limiplasma merdipullorum Bacteria > Firmicutes_A > Clostridia > Christensenellales > CAG-74 > Limiplasma > Limiplasma merdipullorum
Cluster representative

MGYG000311264

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311264 on MGnify
 Show other genomes in cluster
Annotations

MGYG000317277’s cluster representative genome MGYG000311264 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311264 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317277 Copy API Endpoint
Samples containing this genome

MGYG000317277’s cluster representative (MGYG000311264) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311264’s sequence. Because MGYG000317277 has been clustered with MGYG000311264 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317277.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311264

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Containment Sample accession Animal accession Treatment
0.79 SAMEA14095991 Control
0.79 SAMEA9449895 Probiotic
0.79 SAMEA10105033 Prebiotic
0.78 SAMEA7697633 Prebiotic
0.77 SAMEA9449878 Control
0.77 SAMEA7697608 Control
0.77 SAMEA9449886 Control
0.77 SAMEA7722478 Control
0.76 SAMEA10104921 Prebiotic
0.76 SAMEA9449949 Prebiotic