HoloFood Data Portal

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MGYG000316944

Details for MGYG000316944, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Mediterraneibacter merdavium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter merdavium
Cluster representative

MGYG000313770

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313770 on MGnify
 Show other genomes in cluster
Annotations

MGYG000316944’s cluster representative genome MGYG000313770 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313770 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000316944 Copy API Endpoint
Samples containing this genome

MGYG000316944’s cluster representative (MGYG000313770) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313770’s sequence. Because MGYG000316944 has been clustered with MGYG000313770 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000316944.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313770

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Containment Sample accession Animal accession Treatment
0.82 SAMEA10105058 Control
0.81 SAMEA10104962 Control
0.81 SAMEA7025235 Probiotic
0.81 SAMEA7722479 Prebiotic
0.81 SAMEA7697601 Prebiotic
0.81 SAMEA7025234 Control
0.81 SAMEA7697607 Control
0.79 SAMEA10159244 Probiotic
0.78 SAMEA10105008 Control
0.78 SAMEA7571835 Prebiotic