HoloFood Data Portal

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MGYG000316708

Details for MGYG000316708, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ornithomonoglobus merdipullorum Bacteria > Firmicutes_A > Clostridia > UBA1381 > UBA1381 > Ornithomonoglobus > Ornithomonoglobus merdipullorum
Cluster representative

MGYG000309646

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309646 on MGnify
 Show other genomes in cluster
Annotations

MGYG000316708’s cluster representative genome MGYG000309646 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309646 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000316708 Copy API Endpoint
Samples containing this genome

MGYG000316708’s cluster representative (MGYG000309646) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309646’s sequence. Because MGYG000316708 has been clustered with MGYG000309646 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000316708.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309646

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Containment Sample accession Animal accession Treatment
0.76 SAMEA7697588 Probiotic
0.76 SAMEA7571823 Probiotic
0.75 SAMEA7025238 Probiotic
0.75 SAMEA7025242 Control
0.74 SAMEA10159255 Probiotic
0.74 SAMEA7025282 Control
0.74 SAMEA7571822 Probiotic
0.73 SAMEA7571780 Control
0.73 SAMEA10104970 Probiotic
0.73 SAMEA7025287 Prebiotic