HoloFood Data Portal

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MGYG000315983

Details for MGYG000315983, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ventrenecus Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Ventrenecus
Cluster representative

MGYG000311995

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311995 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315983’s cluster representative genome MGYG000311995 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311995 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315983 Copy API Endpoint
Samples containing this genome

MGYG000315983’s cluster representative (MGYG000311995) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311995’s sequence. Because MGYG000315983 has been clustered with MGYG000311995 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315983.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311995

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Containment Sample accession Animal accession Treatment
0.93 SAMEA7571797 Control
0.92 SAMEA9449875 Prebiotic
0.91 SAMEA7571810 Prebiotic
0.90 SAMEA7697623 Probiotic
0.89 SAMEA10159265 Probiotic
0.89 SAMEA10104967 Prebiotic
0.89 SAMEA10105013 Control
0.88 SAMEA9449915 Probiotic
0.87 SAMEA7025250 Control
0.87 SAMEA10104996 Prebiotic