HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000315887

Details for MGYG000315887, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Enterococcus_B hirae Bacteria > Firmicutes > Bacilli > Lactobacillales > Enterococcaceae > Enterococcus_B > Enterococcus_B hirae
Cluster representative

MGYG000312535

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312535 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315887’s cluster representative genome MGYG000312535 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312535 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315887 Copy API Endpoint
Samples containing this genome

MGYG000315887’s cluster representative (MGYG000312535) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312535’s sequence. Because MGYG000315887 has been clustered with MGYG000312535 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315887.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312535

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.25 SAMEA9449942 Control
0.25 SAMEA10159266 Control
0.25 SAMEA7571766 Control
0.24 SAMEA9449889 Probiotic
0.24 SAMEA10130073 Prebiotic
0.24 SAMEA10105012 Control
0.23 SAMEA10104922 Prebiotic
0.23 SAMEA7571802 Control
0.23 SAMEA10130020 Prebiotic
0.21 SAMEA7571838 Control