HoloFood Data Portal

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MGYG000315761

Details for MGYG000315761, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Nanosyncoccus Bacteria > Patescibacteria > Saccharimonadia > Saccharimonadales > Nanosyncoccaceae > Nanosyncoccus
Cluster representative

MGYG000319639

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319639 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315761’s cluster representative genome MGYG000319639 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319639 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315761 Copy API Endpoint
Samples containing this genome

MGYG000315761’s cluster representative (MGYG000319639) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319639’s sequence. Because MGYG000315761 has been clustered with MGYG000319639 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315761.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319639

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7697618 Prebiotic
1.00 SAMEA14409936 Control
1.00 SAMEA9449928 Prebiotic
0.99 SAMEA7697612 Control
0.99 SAMEA7697613 Prebiotic
0.99 SAMEA7571843 Prebiotic
0.99 SAMEA7025283 Control
0.99 SAMEA10145599 Control
0.99 SAMEA10105030 Prebiotic
0.99 SAMEA7025285 Control