HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000315374

Details for MGYG000315374, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Butyricicoccus Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Butyricicoccus
Cluster representative

MGYG000315750

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315750 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315374’s cluster representative genome MGYG000315750 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315750 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315374 Copy API Endpoint
Samples containing this genome

MGYG000315374’s cluster representative (MGYG000315750) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315750’s sequence. Because MGYG000315374 has been clustered with MGYG000315750 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315374.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315750

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.61 SAMEA7025283 Control
0.58 SAMEA7697607 Control
0.57 SAMEA7697581 Probiotic
0.56 SAMEA9449898 Prebiotic
0.55 SAMEA9449852 Prebiotic
0.54 SAMEA7025241 Probiotic
0.54 SAMEA10104955 Control
0.52 SAMEA9449910 Probiotic
0.47 SAMEA10104964 Control
0.46 SAMEA7722476 Control